Fixes

Resolves #1673 by @shnizzedy

Description

• C-PAC/CHANGELOG.md

  Lines 19 to 71 in 6efb38d

  	### Changed
  	- Adds checksum steps to `curl`d steps in Docker build process (for standard and `lite` images)
  	- Makes in-container root directory writable by all
  	### Added dependency
  	- `dc`
  	### Removed dependencies
  	- `bids-validator`
  	- `Node`
  	- `NVM`
  	- `simplejson`
  	- `wxpython`
  	- `yamlordereddictloader`
  	### Upgraded dependencies
  	- `AFNI` 21.1.00 'Domitian' → 23.0.07 'Commodus'
  	- `ANTs` 2.3.3 'Leptomyrmex' → 2.4.3 'Emplastus'
  	- `boto3` 1.7.37 → 1.26.91
  	- `click` 6.7 → 8.1.3
  	- `configparser` 3.7.4 → 5.3.0
  	- `FSL` 5.0.10 (5.0.9) → 6.0.6 (6.0.4:ddd0a010c)
  	- `future` 0.16.0 → 0.18.3
  	- `ICA-AROMA` 0.4.3-beta → 0.4.4-beta
  	- `INDI-Tools` 0.0.7@`main` → 0.0.7@`998c246`
  	- `joblib` 1.0.1 → 1.2.0
  	- `matplotlib` 3.1.3 → 3.7.1
  	- `networkx` 2.4 → 3.1
  	- `nibabel` 3.0.1 → 5.0.1
  	- `nilearn` 0.4.1 → 0.10.0
  	- `nipype` 1.5.1 → 1.8.6
  	- `numpy` 1.21.0 → 1.24.2
  	- `pandas` 1.0.5 → 1.5.3
  	- `patsy` 0.5.0 → 0.5.3
  	- `prov` 1.5.2 → 2.0.0
  	- `psutil` 5.6.6 → 5.9.4
  	- `pybids` 0.15.1 → 0.15.6
  	- `PyPEER` 1.0@`main` → 1.1@`6965d2b`
  	- `Python` 3.7.13 → 3.10.10 (holding back from 3.11 for `sdcflows`, `torch`, and `torchvision`)
  	- `python-dateutil` 2.7.3 → 2.8.2
  	- `PyYAML` 5.4 → 6.0
  	- `requests` 2.21.0 → 2.28.2
  	- `scipy` 1.6.3 → 1.10.1
  	- `sdcflows` 2.0.5 → 2.4.0
  	- `torch` 1.2.0+cu92 → 1.13.1
  	- `torchvision` 0.4.0+cu92 → 0.14.1
  	- `traits` 4.6.0 → 6.3.2
  	- `voluptuous` 0.12.0 → 0.13.1
  	- `wb_command` neurodebian latest → 1.5.0

• Fixes CI bugs and improves CI flow.
• Updates dev versioning to match PEP440

Technical details

• Refactors workflows from workflow_dispatch triggers to workflow_call triggers so event data persists through the run
• Adds ability to rebuild specific stages with [rebuild $STAGE_NAME] in commit message (with )
  • Now we can see which existing staging images in each stage are determined to be rebuilt, like
  • 32,290 of the added lines are just adding a copy of get-pip.py to the repo

Screenshots

Developer Certificate of Origin
Version 1.1

Copyright (C) 2004, 2006 The Linux Foundation and its contributors.
1 Letterman Drive
Suite D4700
San Francisco, CA, 94129

Everyone is permitted to copy and distribute verbatim copies of this
license document, but changing it is not allowed.


Developer's Certificate of Origin 1.1

By making a contribution to this project, I certify that:

(a) The contribution was created in whole or in part by me and I
    have the right to submit it under the open source license
    indicated in the file; or

(b) The contribution is based upon previous work that, to the best
    of my knowledge, is covered under an appropriate open source
    license and I have the right under that license to submit that
    work with modifications, whether created in whole or in part
    by me, under the same open source license (unless I am
    permitted to submit under a different license), as indicated
    in the file; or

(c) The contribution was provided directly to me by some other
    person who certified (a), (b) or (c) and I have not modified
    it.

(d) I understand and agree that this project and the contribution
    are public and that a record of the contribution (including all
    personal information I submit with it, including my sign-off) is
    maintained indefinitely and may be redistributed consistent with
    this project or the open source license(s) involved.